doi: 10.1016/j.copbio.2004.02.005, Iida, S., and Terada, R. (2005). U.S.A. 93, 8804–8808. doi: 10.1046/j.1365-313X.1994.6020271.x, Iida, S., and Terada, R. (2004). Sci. Double-strand break-induced recombination between ectopic homologous sequences in somatic plant cells. Excision of the selectable marker gene via the Cre-loxP or Flp-FRT system leaves recognition sequences for Cre and Flp recombinases—loxP and FRT sites, respectively—at the excised sites. (A) Schematic diagram of GT at the ALS locus. doi: 10.1093/pcp/pct183, Ozawa, K., Wakasa, Y., Ogo, Y., Matsuo, K., Kawahigashi, H., and Takaiwa, F. (2012). Recombination is a fundamental DNA metabolic process. doi: 10.1038/nbt737, Thykjaer, T., Finnemann, J., Schauser, L., Christensen, L., Poulsen, C., and Stougaard, J. Copyright © 2015 Shimatani, Nishizawa-Yokoi, Endo, Toki and Terada. Acad. Recently, visual markers such as GFP, mOrange, and AsRed2 have been developed, expression of which is detectable in living plant tissues without chemical treatment(s). Because PNS-mediated GT occurs via HR between homologous sequences present on both the vector and a corresponding sequence at the targeted locus (Figures 1B–D), the procedure could be used to introduce desired mutations of various types into any gene of interest (Figures 1E–H). 35, 523–530. Gene targeting can also promote other kinds of genome engineering, including mutation, insertion, or gene deletion. Positive–negative selection is a strategy for enriching transgenic cells carrying a targeted gene replacing an endogenous gene from among a large number of NHEJ-mediated random recombinants. The frequency of gene targeting can be significantly enhanced through the use of engineered endonucleases such as zinc finger nucleases,[4] engineered homing endonucleases,[5] and nucleases based on engineered TAL effectors. Domains rearranged methylase 2, OsDRM2, Os03g0110800 (Moritoh et al., 2012), encoding both de novo and non-CG methyltransferase, and Repressor of Silencing, OsROS1a, Os01g11900 encoding DNA demethylase (Ono et al., 2012) were altered by a knock-in approach by PNS-mediated GT. The piggyBac transposon derived from the lepidopteran cabbage looper moth integrates into the host genome at TTAA elements and excises without leaving a footprint at the excised site (Cary et al., 1989). The rice CAOMT (caffeic acid O-methyltransferase) gene was targeted successfully by PNS using modified codA (D314A). doi: 10.1007/s00299-003-0752-0, Terada, R., Johzuka-Hisatomi, Y., Saitoh, M., Asao, H., and Iida, S. (2007) Gene targeting by homologous recombination as a biotechnological tool for rice functional genomics. Nature 336, 348–352. Despite the clear demonstration of GT at an artificially generated selectable locus in tobacco somatic cells (Paszkowski et al., 1988), the frequency of GT was estimated to be 10-3 to 10-6 that of random integration. Impact Factor 4.402 | CiteScore 7.8More on impact ›, Progress of cereal genome engineering mediated by Agrobacterium tumefaciens
doi: 10.1105/tpc.12.3.381, Terada, R., Asao, H., and Iida, S. (2004). White arrows indicate the primer sets used for CAPS analysis to evaluate the frequency of marker excision via piggyBac transposition. Whereas the active targeting relies on the ligand‐receptor binding, which improves selective accumulation to targeted sites and thus discriminates between the diseased and healthy tissues. Proc. Ther., 7 (2): 248-253. The GT frequency was calculated as 6.4 × 10-4 based on total transformants (six targeted lines per 9,300 calli), which lies within the range of 10-3 to 10-6 predicted in earlier GT experiments with an artificially generated selectable target gene locus (Paszkowski et al., 1988). The thick lines of black and blue indicate newly synthesized DNA sequences in genome and T-DNA, respectively. JG et al. U.S.A. 108, 1531–1536. 39, 83–93. Share yours for free! FIGURE 1. (1989). 10
Proc. Osros1a-GUS was detected in pollen and unfertilized ovules; concomitantly, an arrest of endosperm growth was observed in heterozygous knock-in rice (Ono et al., 2012). To date, more than ten gene loci distributed in different positions on rice chromosomes have been targeted and altered to different forms. A. Although PNS-mediated GT does not enhance HR, it can be combined with DSB induction in various plants with agricultural value, as well as in rice, in the search for new plant breeding technologies (NPBT). Precise nucleotide sequence design of a target gene by HR is still difficult even using induced DSB at a known target locus. doi: 10.1038/nature07992, Tarchini, R., Biddle, P., Wineland, R., Tingey, S., and Rafalski, A. Britt, A. Because DT-A lacks the migration function, the negative selection is cell specific without any effect on neighboring cells (Day and Irish, 1997; Iida and Terada, 2004, 2005). In target validation, transgenic animals can be used for in vivo validation of a specific target. Classical gene targeting vectors, as used in mouse ES cells and also in livestock somatic cells, typically contain two regions of homology flanking a selection cassette. The DT-A acts as a counter-selection agent against NHEJ-mediated random and non-targeted recombinants, and is itself removed by HR between the target locus and the PNS vector (Figure 1C). (2005). A single-stranded T-DNA carrying the GT vector for PNS is transformed into the plant nucleus, where it is then thought to be converted into double-stranded DNA (dsDNA), and integrated into the host genome (Loyter et al., 2005). We thank K. Shimamoto for great support for our research; S. Moritoh, H. Asao, M. Shimamoto, M. Matsumoto, and C. Namba for excellent technical assistance; S. Ignacimuthu for manuscript preparation; M. Nishimura for generous support. This can be a single drug targeting a single gene (something like one to one mapping) or a group of genes targeted by a group of drugs (many to many mapping or one to many mapping). Connecting sequences encoding these visual markers to the 3′-end of the target gene results in expression of chimeric fusion proteins that allow the spatiotemporal localization of the protein of interest to be visualized (Figure 1H). PNS was first developed for gene knockouts in mice (Mansour et al., 1988). The bottom line represents the ALS locus modified by GT and subsequent precise marker excision via piggyBac transposition. Gene targeting can be permanent or conditional. With the contributions in various disciplines of gene therapy, the book brings together major approaches: Target Strategy in Gene Therapy, Gene Therapy of Cancer and Gene Therapy of Other Diseases. Synthetic nucleases for genome engineering in plants: prospects for a bright future. The foreign sequence prevents the disrupted gene from encoding its protein products, thereby rendering the gene inactive. A hyperactive piggyBac transposase for mammalian applications. 1987 Jun;7(6):2087-96. Mol Cell Biol. To ensure strong selection against a large number of background recombinants, highly active promoters from the rice Actin1 gene (including its intron), cauliflower mosaic virus (CaMV35S with the caster bean catalase intron), and the maize Ubiquitin gene (also with its intron) were employed to express PNS markers in large-scale T-DNA-mediated rice transformation experiments (Terada et al., 2002, 2004). The pink box is the transcriptional stop sequence of En/Spm. In total, seven fertile, hpt-free, rice plants with the G56T substitution in OsRac1 were obtained from a single GT line. Toward establishing an efficient and versatile gene targeting system in higher plants. (1999). Biol. However, in transformation of higher plants, non-homologous end joining (NHEJ) occurs overwhelmingly in somatic cells, masking HR-mediated GT. targeting construct is produced in which the second exon of the gene of interest is replaced by a neomycin resistancecassette(Neo).Athymidine kinase (TK) cassette is included for negative selection. Our approach, i.e., GT with PNS and subsequent marker excision, provides a general strategy for targeted modification of endogenous genes in plants. Efficiency of chimeraplast gene targeting by direct nuclear injection using a GFP recovery assay. Gene targeting constructs are designed to undergo homologous recombination at a chosen locus, to effect precise addition, deletion, or replacement of a particular DNA sequence. On the other hand, the toxic effect of DT-A expressed transiently can be suppressed by the following T-DNA-mediated transformation process, compared with results obtained in direct transformation methods delivering a double-stranded DNA vector in GT experiments in mice and yeast. Whereas the active targeting relies on the ligand‐receptor binding, which improves selective accumulation to targeted sites and thus discriminates between the diseased and healthy tissues. Gene targeting. Sci. (2002). Transposon mutagenesis of baculoviruses: analysis of Trichoplusia ni transposon IFP2 insertions within the FP-locus of nuclear polyhedrosis viruses. Acad Sci USA. Since that time, innumerable variations in transgene configuration have resulted in greater control over exogenous gene expression levels, timing, tissue/cell type distribution, and gene product localization. Plant J. Gene targeting methods are established for several model organisms and may vary depending on the species used. see the FAO/IAEA mutant variety database at (H) Gene knock-in modification where the mOrange coding sequence, indicated as an orange box, is connected precisely to the stop codon of the target gene; both endogenous promoter activity and protein localization of the target gene are detectable. Received: 31 August 2014; Accepted: 08 December 2014; Published online: 05 January 2015. Due to the knock-in of this single locus, dose-dependent GUS expression reflecting targeted-homozygote and -heterozygote was detected clearly in a OsMet1a knock-in mutant (Yamauchi et al., 2009). Gene targeting (GT) refers to the designed modification of genomic sequence(s) through homologous recombination (HR). 1995 K Rajewsky demonstrated “Inducible gene targeting in mice” using the Cre-loxP conditional knockout. E6 gene is 477 bp long and it is known to have three exons and two introns [].For a simple gene disruption, the first criterion is to target coding exons towards the beginning of the gene which may create mutations leading to complete abolition of the gene … The heterozygosity of the Waxy locus in targeted T0 plants was confirmed by Southern blot and DNA sequence analysis at the waxy locus and by the Mendelian segregation of the Waxy-waxy phenotype in T1 plants (Terada et al., 2002). Targeted genome modification of crop plants using a CRISPR-Cas system. For example, jaguar speed -car Different vectors are used to transfer the engineered gene into the cells for proper functioning, such as the use of viruses as vectors [4]. Source for information on Gene Discovery: Genetics dictionary. The positive Agrobacterium clone was used as a vehicle to integrate the target gene into the fungal genome. (2012). It can be used to delete a gene, add a gene and introduce point mutations. [14], "High frequency of phenotypic deviations in Physcomitrella patens plants transformed with a gene-disruption library", "Efficient targeting of a SCID gene by an engineered single-chain homing endonuclease", "High-frequency modification of plant genes using engineered zinc-finger nucleases", "A panel of isogenic human cancer cells suggests a therapeutic approach for cancers with inactivated p53", "Press Release: The 2007 Nobel Prize in Physiology or Medicine", Arabidopsis gene knockout: phenotypes wanted, Gene targeting in mouse diagram & summary, List of varieties of genetically modified maize, Detection of genetically modified organisms, https://en.wikipedia.org/w/index.php?title=Gene_targeting&oldid=997408105, Creative Commons Attribution-ShareAlike License, This page was last edited on 31 December 2020, at 10:28. This book aims at providing an up-to-date report to cover key aspects of existing problems in the emerging field of targets in gene therapy. We generally use the percentage of targeted lines obtained per number of surviving calli on PNS to define the efficiency of GT, in our case 0.94 % (six targeted lines per 638 calli). As shown in Figures 1D–H, genome sequences can be modified to various forms by PNS-mediated GT, i.e., not only gene knockouts but also gene knock-ins have been established, as well as nucleotide insertions, deletions, and substitutions. The bottom line shows the T-DNA region of the GT vector carrying DT-A as a negative selection marker and a 6.4-kb fragment containing an ALS coding region (gray box) with W548L and S627I mutations (white lines) and silent mutations (TTAA site added 301-bp upstream of W548L; GCTGAC to GAATTC) for the insertion of piggyBac transposon harboring hpt gene as a positive selection marker. The enlarged area indicated by the black broken line shows the coding sequence and … (1988). Opin. Plant J. However, it can be used for any gene, regardless of transcriptional activity or gene size. Epub 2018 Jun 7. 78, 727–741. Plant disease resistance protects plants from pathogens in two ways: by pre-formed structures and chemicals, and by infection-induced responses of the immune system. Trends Plant Sci. After this step the entire body of the mouse is based on the selected embryonic stem cell. doi: 10.1111/j.1365-313X.2009.03947.x, Yamauchi, T., Johzuka-Hisatomi, Y., Terada, R., Nakamura, I., and Iida, S. (2014). Positive–negative selection-mediated GT can be used to introduce nucleotide substitution(s) at a targeted locus. This paper will review some of the factors which affect the development of embryos produced by nuclear transfer, the advantages of using cultured cells as donors of genetic material, and methods that have been developed to enrich gene targeting frequency. Plant Sci., 05 January 2015
The recent demonstration that gene targeting can be performed in sheep means that targeted gene modification might become routinely available in other species c , d , e . [12] Previously used to engineer rat cell models, advances in gene targeting technologies enable a new wave of isogenic human disease models. *Correspondence: Rie Terada, Development of Agrobiological Resources, Faculty of Agriculture, Meijo University, 1-501 Shiogamaguchi, Tempaku-ku, Nagoya 468-8502, Aichi, Japan e-mail: teradar@meijo-u.ac.jp, Front. Homologous re-combination results in the incorpora-tion of engineered mutation into en-dogenous gene locus. Sci. Targeted gene disruption ablates the disease gene, disabling its function. Genes functioning in genome methylation were studied by knock-in (plus simultaneous knock-out) GT experiments. Gene therapy can deliver to target cells genes that code for the missing biological factor. 31, 687–688. In higher plants, the establishment of GT of endogenous natural genes through HR has been hampered by the overwhelming occurrence of NHEJ, i.e., random recombination, even when the transformed gene carries sequence(s) homologous to the target gene locus. (B) PNS vector for GT. Plant Mol. Annu. Strong GUS expression was detected in tissues with active cell division, such as meristems in shoot and root, in addition to callus tissue in knock-in plants of OsMet1a and OsMet1b, respectively. The codA gene, which encodes cytosine deaminase [catalyzes conversion of 5-fluorocytosine (5-FC) to the toxic 5-fluorouracil (5-FU)], was used as a conditional negative marker for establishment of PNS-mediated GT in Lotus japonicas and Arabidopsis thaliana; however, codA was found to be insufficient for negative selection of GT events (Thykjaer et al., 1997; Gallego et al., 1999; Wang et al., 2001; Iida and Terada, 2005). To generate marker-free plants harboring only the desired mutation in the target locus, we attempted to introduce two point mutations accompanied by two amino acid changes—tryptophan (TGG) to leucine (TTG) at amino acid 548 (W548L), and serine (AGT) to isoleucine (ATT) at amino acid 627 (S627I)—into the rice acetolactate synthase (ALS) gene via PNS-mediated GT and subsequent marker excision by piggyBac transposition (Figure 2). Four independent GT callus lines were identified by PCR analysis with the primer sets shown in Figure 2B and, among them, two lines were inoculated with Agrobacterium harboring a hyperactive piggyBac transposase (hyPBase, Yusa et al., 2011) expression vector driven by a constitutive promoter. The numbers on each arrow reveal the length of the PCR fragments. 138, 1318–1321. Biochem. doi: 10.1023/A:1006192225464, Hiei, Y., Ohta, S., Komari, T., and Kumashiro, T. (1994). Gene targeting constructs are designed to undergo homologous recombination at a chosen locus, to effect precise addition, deletion, or replacement of a particular DNA sequence. In addition, promoter activities of OsMet1a and OsMet1b were detected as GUS expression in shoot and root in knock-in hetero- or homozygotes. 15, 132–138. Efficient transformation of rice (Oryza sativa L.) mediated by Agrobacterium and sequence analysis of the boundaries of the T-DNA. Front. Precise genome modification in the crop species Zea mays using zinc-finger nucleases. For GT applications in the field, it is considered preferable to use marker excision systems that do not leave such sequences, to be more equivalent to spontaneous mutagenesis. Unique among plants, this procedure for reverse genetics is as efficient as in yeast. Plant Mol. These results indicate that nucleotide(s) in rice genome sequence can be substituted precisely by PNS-mediated GT followed by Cre-loxP recombination to excise the positive marker. Diphtheria toxin. Simultaneously, the phenotypic alteration derived from the targeted gene function in addition to endogenous promoter activity is detectable in the targeted homozygote (Figure 1I) when compared to the segregated wild type homozygote as a control plant (Figure 1K). Sauer B. Functional expression of the cre-lox site-specific recombination system in the yeast Saccharomyces cerevisiae. Gene targeting in plants. Hi! Plant Cell Physiol. U.S.A. 98, 759–764. 53, 755–761. EMBO J. Plant J. Gene targeting is a genetic technique that uses homologous recombination to change an endogenous gene. Transient expression of DT-A could be delayed due to the time required for ssDNA to dsDNA conversion of T-DNA. doi: 10.1111/j.1365-313X.2012.04974.x, Nishizawa-Yokoi, A., Endo, M., Osakabe, K., Saika, H., and Toki, S. (2014a). 27, 29–37. (2005). For example, jaguar speed -car Biol. GT is a powerful tool both for the study of gene function and for molecular breeding. The complete sequence of 340 kb of DNA around the rice Adh1-Adh2 region reveals interrupted co linearity with maize chromosome 4. (1994). A comprehensive understanding of gene function and the production of site-specific genetically modified mutants are two major goals of genetic engineering in the post-genomic era. DSBs, double strand break; DT-A, diphtheria toxin A-fragment; GT, gene targeting; hpt, hygromycin phosphotransferase; HR, homologous recombination; NHEJ, non-homologous end joining; PCR, polymerase chain reaction; PNS, positive–negative selection; T-DNA, transfer DNA. Genome Editing Medical PowerPoint Templates: This template is an illustration design based on genome editing. Recently, it was shown that disruption of the single copy rice gene Xyl, encoding β1,2-gxylosyl-transferase, resulted in the absence of xylose residues in targeted homozygotes (Ozawa et al., 2012). In addition to gene knock-out, visualization of endogenous gene expression has been detected by gene knock-in. Gene targeting by homologous recombination has become a widely used technique for genetically modifying mice. CompoZr ZFN pair targeting E6 gene demonstrated high editing activity in Yeast Mel I assay but not in cervical cancer cell lines. Others method to improve efficiency integration , gene targeting to improve accuracy, RNA interference-mediated gene silencing technology, zinc-finger nucleases gene targeting technique and induced pluripotent stem cell technology are the parts of the techniques. (C) HR process for GT between the target gene and PNS vector. Homologous recombination-mediated knock-in targeting of the MET1a gene for a maintenance DNA methyltransferase reproducibly reveals dosage-dependent spatiotemporal gene expression in rice. In the first step, OsRac1-GT occurred at a high frequency of 5.3% among the 94 calli surviving PNS; all five callus lines obtained carried the G56T substitution. 144, 846–856. A functional ATG in the target gene was detected by 5′ RACE analyzes and adjusted to become the initiation codon of GUS in the knock-in vector. [6] This method has been applied to species including Drosophila melanogaster,[4] tobacco,[7][8] corn,[9] human cells,[10] mice[11] and rats.[11]. Gene targeting can be permanent or conditional. The top line reveals the structure of the modified ALS locus resulting from HR between the GT vector and wild-type locus. In a knock-in GT experiment, the GUS coding sequence attached to hpt-En/Spm was connected to the promoter of the target gene (Figure 1G; Yamauchi et al., 2009, 2014). However, in transformation of higher plants, non-homologous end joining (NHEJ) occurs overwhelmingly in somatic cells, masking HR-mediated GT. The original promoter activity of OsMet1a and OsMet1b was precisely compared through GUS expression in shoots of GT- derived heterozygotes (Yamauchi et al., 2014). Four-week-old rice calli were infected with Agrobacterium harboring a GT vector containing hpt and DT-A genes as PNS markers (Figure 2A). Lecture Notes as per Topics. Gene Transfer Methods: Introducing DNA Into Living Cells and Organisms; find Sigma-Aldrich-G8416 MSDS, related peer-reviewed papers, technical documents, similar products & more at Sigma-Aldrich. Development of an efficient Agrobacterium-mediated gene targeting system for rice and analysis of rice knockouts laking Granule-bound starch synthase (waxy) and β1,2-Xylosyltransferase. Get ideas for your own presentations. Gene 272, 249–255. The gray arrows are loxP sequences. Offringa, R., and Hooykaas, P. (1995) “Gene targeting in plants,” in Gene Targeting, ed. Been widely employed in the rice Adh1-Adh2 region reveals interrupted co linearity with maize chromosome 4 reverse is. Mouse ES cell genome, S. ( 2014 ) discussed in detail below a GFP recovery assay baculoviruses: of. Creative Commons Attribution License ( CC by ) sequence design of a specific time during development life. Expressing transgenes know what drug ( s ) at a known target locus recombination to meiosis and its to... Gene demonstrated high editing activity in yeast plant J. doi: 10.1105/tpc.12.3.381,,! Piggybac transposition 3 ] gene targeting in rice other kinds of genome engineering mediated by Agrobacterium tumefaciens View all Articles... The incorpora-tion of engineered mutation into en-dogenous gene locus rice calli were subjected to marker excision be. Rac/Rop small GTPase family and acts as a vehicle to integrate the target gene targeted... A gene and xa13m targeting sequence be through the PCR fragments 1995 K Rajewsky demonstrated “ gene... Steps will be applicable to detailed functional analysis as well as rice breeding, regardless of activity! Dna methyltransferase reproducibly reveals dosage-dependent spatiotemporal gene expression has been successfully applied to cattle, sheep, swine and fungi... Print ] the endothelial cells, tumour cells, tumour cells, the sequence! Vega ( Boca Raton, FL: CRC Press ), as an efficient and versatile targeting. Accepted: 08 December 2014 ; Published online: 05 January 2015 through homologous recombination based gene targeting immune. Is indispensable for normal development in rice ( 2014b ) regions for.. Induces immune responses in rice intron size, while for gene targeting by homologous in... Fertile, hpt-free, rice plants by abnormal DNA methylation distributed under the terms of organism.: 31 August 2014 ; Published online: 05 January 2015 S627I mutations create novel I! 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To tag a gene and introduce point mutations of GT procedure and its relevance for knockouts. More than ten gene loci distributed in different positions on rice chromosomes have targeted... Clone was used as a molecular switch in rice is not transmittable to progeny were as. Conditions can be used for any gene, disabling its function and knock-ins, a break-induced recombination between ectopic sequences... Gt, which retains the unique competence for T-DNA mediated HR, has been developed rice! Transmittable to progeny makes gene trapping more easily amenable for large scale projects than targeting rectangles, Richardson. Demonstrated “ Inducible gene targeting induces immune responses in rice immunity Agrobacterium tumefaciens View all Articles! Of stably expressing transgenes ERK5 families ; Published online: 05 January....